Institute of Aquaculture

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Article

Identification of proteins from the secretory/excretory products (SEPs) of the branchiuran ectoparasite Argulus foliaceus (Linnaeus, 1758) reveals unique secreted proteins amongst haematophagous ecdysozoa

AmbuAli A, Monaghan SJ, McLean K, Inglis NF, Bekaert M, Wehner S & Bron JE (2020) Identification of proteins from the secretory/excretory products (SEPs) of the branchiuran ectoparasite Argulus foliaceus (Linnaeus, 1758) reveals unique secreted proteins amongst haematophagous ecdysozoa. Parasites and Vectors, 13 (1), Art. No.: 88. https://doi.org/10.1186/s13071-020-3964-z

Article

Collagen extract obtained from Nile tilapia (Oreochromis niloticus L.) skin accelerates wound healing in rat model via up regulating VEGF, bFGF, and α-SMA genes expression

Elbialy ZI, Atiba A, Abdelnaby A, Al-Hawary II, Elsheshtawy A, El-Serehy HA, Abdel-Daim MM, Fadl SE & Assar DH (2020) Collagen extract obtained from Nile tilapia (Oreochromis niloticus L.) skin accelerates wound healing in rat model via up regulating VEGF, bFGF, and α-SMA genes expression. BMC Veterinary Research, 16 (1), Art. No.: 352. https://doi.org/10.1186/s12917-020-02566-2

Article

Identification of miR-145 as a Key Regulator Involved in LC-PUFA Biosynthesis by Targeting hnf4α in the Marine Teleost Siganus canaliculatus

Chen C, Zhang M, Li Y, Wang S, Xie D, Wen X, Hu Y, Shen J, He X, You C, Tocher DR & Monroig Ó (2020) Identification of miR-145 as a Key Regulator Involved in LC-PUFA Biosynthesis by Targeting hnf4α in the Marine Teleost Siganus canaliculatus. Journal of Agricultural and Food Chemistry, 68 (51), pp. 15123-15133. https://doi.org/10.1021/acs.jafc.0c04649

Article

Dietary supplementation with a specific mannan-rich yeast parietal fraction enhances the gut and skin mucosal barriers of Atlantic salmon (Salmo salar) and reduces its susceptibility to sea lice (Lepeophtheirus salmonis)

Leclercq E, Pontefract N, Rawling M, Valdenegro V, Aasum E, Andujar LV, Migaud H, Castex M & Merrifield D (2020) Dietary supplementation with a specific mannan-rich yeast parietal fraction enhances the gut and skin mucosal barriers of Atlantic salmon (Salmo salar) and reduces its susceptibility to sea lice (Lepeophtheirus salmonis). Aquaculture, 529, Art. No.: 735701. https://doi.org/10.1016/j.aquaculture.2020.735701

Article

Isolation and Molecular Characterization of Streptococcal Species recovered from Clinical Infections in Farmed Nile Tilapia (Oreochromis niloticus) in the Philippines

Legario F, Choresca Jr CH, Turnbull JF & Crumlish M (2020) Isolation and Molecular Characterization of Streptococcal Species recovered from Clinical Infections in Farmed Nile Tilapia (Oreochromis niloticus) in the Philippines. Journal of Fish Diseases, 43 (11), pp. 1431-1442. https://doi.org/10.1111/jfd.13247

Article

A comparison of the use of different swab materials for optimal diagnosis of amoebic gill disease (AGD) in Atlantic salmon (Salmo salar L.)

Fernandez‐Senac C, Fridman S, Sokolowska J, Monaghan SJ, Garzon T, Betancor M, Paladini G, Adams A & Bron JE (2020) A comparison of the use of different swab materials for optimal diagnosis of amoebic gill disease (AGD) in Atlantic salmon (Salmo salar L.). Journal of Fish Diseases, 43 (11), pp. 1463-1472. https://doi.org/10.1111/jfd.13243

Article

Higher dietary micronutrients are required to maintain optimal performance of Atlantic salmon (Salmo salar) fed a high plant material diet during the full production cycle

Vera LM, Hamre K, Espe M, Hemre G, Skjærven K, Lock E, Prabhu AJ, Leeming D, Migaud H, Tocher DR & Taylor JF (2020) Higher dietary micronutrients are required to maintain optimal performance of Atlantic salmon (Salmo salar) fed a high plant material diet during the full production cycle. Aquaculture, 528, Art. No.: 735551. https://doi.org/10.1016/j.aquaculture.2020.735551

Article

Effects of dietary zinc level on growth performance, lipolysis and expression of genes involved in the calcium/calmodulin-dependent protein kinase kinase-β/AMP-activated protein kinase pathway in juvenile Pacific white shrimp

Shi B, Jin M, Jiao L, Betancor MB, Tocher DR & Zhou Q (2020) Effects of dietary zinc level on growth performance, lipolysis and expression of genes involved in the calcium/calmodulin-dependent protein kinase kinase-β/AMP-activated protein kinase pathway in juvenile Pacific white shrimp. British Journal of Nutrition, 124 (8), pp. 773-784. https://doi.org/10.1017/s0007114520001725

Article

Influence of dietary zinc on growth, zinc bioaccumulation and expression of genes involved in antioxidant and innate immune in juvenile mud crabs (Scylla paramamosain)

Luo J, Zhu T, Jin M, Cheng X, Yuan Y, Wang X, Lu J, Jiao L, Tocher DR & Zhou Q (2020) Influence of dietary zinc on growth, zinc bioaccumulation and expression of genes involved in antioxidant and innate immune in juvenile mud crabs (Scylla paramamosain). British Journal of Nutrition, 124 (7), pp. 681-692. https://doi.org/10.1017/s0007114520001531

Conference Paper (published)

Ir-Man: An Information Retrieval Framework for Marine Animal Necropsy Analysis

Carmichael AFB, Bhowmik D, Baily J, Brownlow A, Gunn GJ & Reeves A (2020) Ir-Man: An Information Retrieval Framework for Marine Animal Necropsy Analysis. In: BCB '20: Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics. 11th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB 2020), Virtual, 21.09.2020-24.09.2020. New York: ACM, p. 67. https://doi.org/10.1145/3388440.3412417

Article

Development of a C18 Supercritical Fluid Chromatography-Tandem Mass Spectrometry Methodology for the Analysis of Very-Long-Chain Polyunsaturated Fatty Acid Lipid Matrices and Its Application to Fish Oil Substitutes Derived from Genetically Modified Oilseeds in the Aquaculture Sector

Broughton R, Tocher DR & Betancor MB (2020) Development of a C18 Supercritical Fluid Chromatography-Tandem Mass Spectrometry Methodology for the Analysis of Very-Long-Chain Polyunsaturated Fatty Acid Lipid Matrices and Its Application to Fish Oil Substitutes Derived from Genetically Modified Oilseeds in the Aquaculture Sector. ACS Omega, 5 (35), pp. 22289-22298. https://doi.org/10.1021/acsomega.0c02631

Article

Dietary fenofibrate attenuated high-fat-diet-induced lipid accumulation and inflammation response partly through regulation of pparα and sirt1 in juvenile black seabream (Acanthopagrus schlegelii)

Jin M, Zhu T, Tocher D, Luo J, Shen Y, Li X, Pan T, Yuan Y, Betancor M, Jiao L, Sun P & Zhou Q (2020) Dietary fenofibrate attenuated high-fat-diet-induced lipid accumulation and inflammation response partly through regulation of pparα and sirt1 in juvenile black seabream (Acanthopagrus schlegelii). Developmental and Comparative Immunology, 109, Art. No.: 103691. https://doi.org/10.1016/j.dci.2020.103691

Article

The miR-15/16 Cluster Is Involved in the Regulation of Vertebrate LC-PUFA Biosynthesis by Targeting pparγ as Demonostrated in Rabbitfish Siganus canaliculatus

Sun J, Chen C, You C, Liu Y, Ma H, Monroig Ó, Tocher DR, Wang S & Li Y (2020) The miR-15/16 Cluster Is Involved in the Regulation of Vertebrate LC-PUFA Biosynthesis by Targeting pparγ as Demonostrated in Rabbitfish Siganus canaliculatus. Marine Biotechnology, 22 (4), p. 475–487. https://doi.org/10.1007/s10126-020-09969-0

Article

Visualizing the Social in Aquaculture: How Social Dimension Components Illustrate the Effects of Aquaculture across Geographic Scales

Krause G, Billing S, Dennis J, Grant J, Fanning L, Filgueira R, Miller M, Perez Agúndez JA, Stybel N, Stead SM & Wawrzynski W (2020) Visualizing the Social in Aquaculture: How Social Dimension Components Illustrate the Effects of Aquaculture across Geographic Scales. Marine Policy, 118, Art. No.: 103985. https://doi.org/10.1016/j.marpol.2020.103985

Article

Toxicological mechanism of excessive copper supplementation: Effects on coloration, copper bioaccumulation and oxidation resistance in mud crab Scylla paramamosain

Luo J, Zhu T, Wang X, Chen X, Yuan Y, Jin M, Betancor M, Tocher D & Zhou Q (2020) Toxicological mechanism of excessive copper supplementation: Effects on coloration, copper bioaccumulation and oxidation resistance in mud crab Scylla paramamosain. Journal of Hazardous Materials, 395, Art. No.: 122600. https://doi.org/10.1016/j.jhazmat.2020.122600

Article

Dietary clenbuterol modifies the expression of genes involved in the regulation of lipid metabolism and growth in the liver, skeletal muscle, and adipose tissue of Nile tilapia (Oreochromis niloticus)

Mohamed RA, Elbialy ZI, Abd El Latif AS, Shukry M, Assar DH, El Nokrashy AM, Elsheshtawy A, Dawood MA, Paray BA, Doan HV & El-Far AH (2020) Dietary clenbuterol modifies the expression of genes involved in the regulation of lipid metabolism and growth in the liver, skeletal muscle, and adipose tissue of Nile tilapia (Oreochromis niloticus). Aquaculture Reports, 17, Art. No.: 100319. https://doi.org/10.1016/j.aqrep.2020.100319

Article

Using fatty acid markers to distinguish between effects of salmon (Salmo salar) and halibut (Hippoglossus hippoglossus) farming on mackerel (Scomber scombrus) and whiting (Merlangius merlangus)

Ghanawi J & McAdam BJ (2020) Using fatty acid markers to distinguish between effects of salmon (Salmo salar) and halibut (Hippoglossus hippoglossus) farming on mackerel (Scomber scombrus) and whiting (Merlangius merlangus). Aquaculture Research, 51 (6), pp. 2229-2242. https://doi.org/10.1111/are.14568

Article

Central and peripheral clocks in Atlantic bluefin tuna (Thunnus thynnus, L.): Daily rhythmicity of hepatic lipid metabolism and digestive genes

Betancor M, Sprague M, Ortega A, de la Gándara F, Tocher D, Ruth R, Perkins E & Mourente G (2020) Central and peripheral clocks in Atlantic bluefin tuna (Thunnus thynnus, L.): Daily rhythmicity of hepatic lipid metabolism and digestive genes. Aquaculture, 523, Art. No.: 735220. https://doi.org/10.1016/j.aquaculture.2020.735220

Article

Exploring the relationship between stress coping styles and sex, origin and reproductive success, in Senegalese sole (Solea senegalensis) breeders in captivity

Ibarra-Zatarain Z, Martín I, Rasines I, Fatsini E, Rey S, Chereguini O & Duncan N (2020) Exploring the relationship between stress coping styles and sex, origin and reproductive success, in Senegalese sole (Solea senegalensis) breeders in captivity. Physiology and Behavior, 220, Art. No.: 112868. https://doi.org/10.1016/j.physbeh.2020.112868

Article

Biological, socio-economic, and administrative opportunities and challenges to moving aquaculture offshore for small French oyster-farming companies

Barillé L, Bris AL, Goulletquer P, Thomas Y, Glize P, Kane F, Falconer L, Guillotreau P, Trouillet B, Palmer S & Gernez P (2020) Biological, socio-economic, and administrative opportunities and challenges to moving aquaculture offshore for small French oyster-farming companies. Aquaculture, 521, Art. No.: 735045. https://doi.org/10.1016/j.aquaculture.2020.735045

Article

Growth performance, nutrient digestibility and intestinal morphology of rainbow trout (Oncorhynchus mykiss) fed graded levels of the yeasts Saccharomyces cerevisiae and Wickerhamomyces anomalus

Vidakovic A, Huyben D, Sundh H, Nyman A, Vielma J, Passoth V, Kiessling A & Lundh T (2020) Growth performance, nutrient digestibility and intestinal morphology of rainbow trout (Oncorhynchus mykiss) fed graded levels of the yeasts Saccharomyces cerevisiae and Wickerhamomyces anomalus. Aquaculture Nutrition, 26 (2), pp. 275-286. https://doi.org/10.1111/anu.12988

Article

Pre-deployment acclimatisation of farmed ballan wrasse (Labrus bergylta) to sea-cage conditions promotes behaviour analogous to wild conspecifics when used as cleaner fish in Atlantic salmon (Salmo salar) farms

Brooker AJ, Davie A, Leclercq E, Zerafa B & Migaud H (2020) Pre-deployment acclimatisation of farmed ballan wrasse (Labrus bergylta) to sea-cage conditions promotes behaviour analogous to wild conspecifics when used as cleaner fish in Atlantic salmon (Salmo salar) farms. Aquaculture, 520, Art. No.: 734771. https://doi.org/10.1016/j.aquaculture.2019.734771

Article

Cognitive appraisal in fish: stressor predictability modulates the physiological and neurobehavioural stress response in sea bass

Cerqueira M, Millot S, Felix A, Silva T, Oliveira GA, Oliveira CCV, Rey S, MacKenzie S & Oliveira R (2020) Cognitive appraisal in fish: stressor predictability modulates the physiological and neurobehavioural stress response in sea bass. Proceedings of the Royal Society B: Biological Sciences, 287 (1923), Art. No.: 20192922. https://doi.org/10.1098/rspb.2019.2922