Institute of Aquaculture

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Outputs related to Institute of Aquaculture

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Book Chapter

Diverging Strategies to Planning an Ecologically Coherent Network of MPAs in the North Sea: The Roles of Advocacy, Evidence and Pragmatism in the Face of Uncertainty

Caveen AJ, Fitzsimmons C, Pieraccini M, Dunn E, Sweeting CJ, Johnson ML, Bloomfield H, Jones EV, Lightfoot P, Gray TS, Stead SM & Polunin NVC (2014) Diverging Strategies to Planning an Ecologically Coherent Network of MPAs in the North Sea: The Roles of Advocacy, Evidence and Pragmatism in the Face of Uncertainty. In: Johnson ML & Sandell J (eds.) Advances in Marine Biology. unknown: Academic Press, pp. 325-370. https://doi.org/10.1016/B978-0-12-800214-8.00009-8

Article

An analysis of the effects of different dietary macronutrient energy sources on the growth and energy partitioning by juvenile barramundi, Lates calcarifer, reveal a preference for protein-derived energy

Glencross B, Blyth D, Irvin S, Bourne N & Wade NM (2014) An analysis of the effects of different dietary macronutrient energy sources on the growth and energy partitioning by juvenile barramundi, Lates calcarifer, reveal a preference for protein-derived energy. Aquaculture Nutrition, 20 (6), pp. 583-594. https://doi.org/10.1111/anu.12111

Article

VIBRIO 2014 meeting report

Mazel D, Colwell R, Klose K, Oliver J, Crumlish M, McDougald D, Bland MJ & Austin B (2014) VIBRIO 2014 meeting report. Research in Microbiology, 165 (10), pp. 857-864. https://doi.org/10.1016/j.resmic.2014.10.009

Book Chapter

Homology Search for Small Structured Non-coding RNAs

Marz M, Wehner S & Stadler PF (2014) Homology Search for Small Structured Non-coding RNAs. In: Hartmann R, Bindereif A, Schon A & Westhof E (eds.) Handbook of RNA Biochemistry. Weinheim: Wiley-VCH Verlag GmbH & Co. KGaA, pp. 619-632. http://dx.doi.org/10.1002/9783527647064.ch29; https://doi.org/10.1002/9783527647064.ch29

Article

Acute stress response in gilthead sea bream (Sparus aurata L.) is time-of-day dependent: Physiological and oxidative stress indicators

Vera L, Montoya A, Pujante I, Perez Sanchez J, Calduch-Giner J, Mancera JM, Moliner J & Sanchez Vazquez FJ (2014) Acute stress response in gilthead sea bream (Sparus aurata L.) is time-of-day dependent: Physiological and oxidative stress indicators. Chronobiology International, 31 (9), pp. 1051-1061. https://doi.org/10.3109/07420528.2014.945646

Research Report

Prevalence and Risk Factors for Infection with Pathogenic Faecal Bacteria in Scottish grey seals (Halichoerus grypus) (Briefing Paper)

Baily J, Foster G, Brown D, Coia JE, Davison N, Moss SE, Watson E, Willoughby K, Hall AJ & Dagleish MP (2014) Prevalence and Risk Factors for Infection with Pathogenic Faecal Bacteria in Scottish grey seals (Halichoerus grypus) (Briefing Paper). NERC Special Committee on Seals. Special Committee on Seals (SCOS) Report, 2014. Sea Mammal Research Unit, University of St Andrews. http://www.smru.st-andrews.ac.uk/

Book Chapter

Mediator Probe PCR: Detection of Real-Time PCR by Label-Free Probes and a Universal Fluorogenic Reporter

Wadle S, Rubenwolf S, Lehnert M, Faltin B, Weidmann M, Hufert FT, Zengerle R & von Stetten F (2014) Mediator Probe PCR: Detection of Real-Time PCR by Label-Free Probes and a Universal Fluorogenic Reporter. In: Biassoni R & Raso A (eds.) Quantitative Real-Time PCR: Methods and Protocols. Methods in Molecular Biology, 1160. New York: Springer, pp. 55-73. http://link.springer.com/protocol/10.1007/978-1-4939-0733-5_6#; https://doi.org/10.1007/978-1-4939-0733-5_6

Article

Genetic and biological characterization of selected Changuinola viruses (Reoviridae, Orbivirus) from Brazil

Silva SP, Dilcher M, Weber F, Hufert FT, Weidmann M, Cardoso JF, Carvalho VL, Chang JO, Martins LC, Lima CPS, Silva DEA, Vianez-Junior JLSG, Popov VL, Travassos da Rosa APA, Tesh RB, Vasconcelos PFC & Nunes MRT (2014) Genetic and biological characterization of selected Changuinola viruses (Reoviridae, Orbivirus) from Brazil. Journal of General Virology, 95 (10), pp. 2251-2259. https://doi.org/10.1099/vir.0.064691-0

Article

Effect of the coexistence on the replication of striped jack nervous necrosis virus (SJNNV) and red-spotted grouper nervous necrosis virus (RGNNV) using an in vitro approach

Lopez Jimena B, Garcia-Rosado E, Infante C, Castro D, Borrego JJ & Alonso MdC (2014) Effect of the coexistence on the replication of striped jack nervous necrosis virus (SJNNV) and red-spotted grouper nervous necrosis virus (RGNNV) using an in vitro approach. Journal of Applied Ichthyology, 30 (5), pp. 916-922. https://doi.org/10.1111/jai.12473

Article

Investigating long-chain polyunsaturated fatty acid biosynthesis in teleost fish: Functional characterization of fatty acyl desaturase (Fads2) and Elovl5 elongase in the catadromous species, Japanese eel Anguilla japonica

Wang S, Monroig O, Tang G, Zhang L, You C, Tocher DR & Li Y (2014) Investigating long-chain polyunsaturated fatty acid biosynthesis in teleost fish: Functional characterization of fatty acyl desaturase (Fads2) and Elovl5 elongase in the catadromous species, Japanese eel Anguilla japonica. Aquaculture, 434, pp. 57-65. https://doi.org/10.1016/j.aquaculture.2014.07.016

Article

Detection of very long antisense transcripts by whole transcriptome RNA-Seq analysis of Listeria monocytogenes by semiconductor sequencing technology

Wehner S, Mannala GK, Qing X, Madhugiri R, Chakraborty T, Mraheil MA, Hain T & Marz M (2014) Detection of very long antisense transcripts by whole transcriptome RNA-Seq analysis of Listeria monocytogenes by semiconductor sequencing technology. PLoS ONE, 9 (10), Art. No.: e108639. https://doi.org/10.1371/journal.pone.0108639

Article

Optimisation and standardisation of functional immune assays for striped catfish (Pangasianodon hypophthalmus) to compare their immune response to live and heat killed Aeromonas hydrophila as models of infection and vaccination

Sirimanapong W, Thompson K, Kledmanee K, Thaijongrak P, Collet B, Ooi EL & Adams A (2014) Optimisation and standardisation of functional immune assays for striped catfish (Pangasianodon hypophthalmus) to compare their immune response to live and heat killed Aeromonas hydrophila as models of infection and vaccination. Fish and Shellfish Immunology, 40 (2), pp. 374-383. https://doi.org/10.1016/j.fsi.2014.07.021

Article

Quantitative methods to measure pigmentation variation in farmed Giant Tiger Prawns, Penaeus monodon, and the effects of different harvest methods on cooked colour

Wade NM, Paulo C, Goodall J, Fischer M, Poole S & Glencross B (2014) Quantitative methods to measure pigmentation variation in farmed Giant Tiger Prawns, Penaeus monodon, and the effects of different harvest methods on cooked colour. Aquaculture, 433, pp. 513-519. https://doi.org/10.1016/j.aquaculture.2014.07.014

Article

Effect of ration level and dietary docosahexaenoic acid content on the requirements for long-chain polyunsaturated fatty acids by juvenile barramundi (Lates calcarifer)

Morton KM, Blyth D, Bourne N, Irvin S & Glencross B (2014) Effect of ration level and dietary docosahexaenoic acid content on the requirements for long-chain polyunsaturated fatty acids by juvenile barramundi (Lates calcarifer). Aquaculture, 433, pp. 164-172. https://doi.org/10.1016/j.aquaculture.2014.05.047

Article

Lipopolysaccharides isolated from Aeromonas salmonicida and Vibrio anguillarum show quantitative but not qualitative differences in inflammatory outcome in Sparus aurata (Gilthead seabream)

Boltana S, Tridico R, Teles M, MacKenzie S & Tort L (2014) Lipopolysaccharides isolated from Aeromonas salmonicida and Vibrio anguillarum show quantitative but not qualitative differences in inflammatory outcome in Sparus aurata (Gilthead seabream). Fish and Shellfish Immunology, 39 (2), pp. 475-482. https://doi.org/10.1016/j.fsi.2014.06.003

Article

Interactions between dietary docosahexaenoic acid and other long-chain polyunsaturated fatty acids on performance and fatty acid retention in post-smolt Atlantic salmon (Salmo salar)

Glencross B, Tocher DR, Matthew C & Bell JG (2014) Interactions between dietary docosahexaenoic acid and other long-chain polyunsaturated fatty acids on performance and fatty acid retention in post-smolt Atlantic salmon (Salmo salar). Fish Physiology and Biochemistry, 40 (4), pp. 1213-1227. https://doi.org/10.1007/s10695-014-9917-8

Poster

Drug susceptibility assessment of sea lice by time-to-response toxicity analysis

Carmichael SN, Christie HRL, Heumann J, Bassett DI, Bron J & Sturm A (2014) Drug susceptibility assessment of sea lice by time-to-response toxicity analysis. 10th International Sea Lice Conference, Portland, ME, USA, 31.08.2014-05.09.2014. http://sealice2014.businesscatalyst.com/assets/abstract-book-v6.2-final2.pdf

Conference Paper (published)

Use of RAD sequencing to isolate a sex-specific SNP marker in the salmonlouse Lepeophtheirus salmonis (Kroyer, 1837)

Carmichael SN, Bekaert M, Taggart J, Ireland J, Christie HRL, Bassett DI, Bron J, Skuce P, Gharbi K & Skern-Mauritzen R (2014) Use of RAD sequencing to isolate a sex-specific SNP marker in the salmonlouse Lepeophtheirus salmonis (Kroyer, 1837). In: Sea Lice 2014: The 10th International Sea Lice Conference Book of Abstracts. 10th International Sea Lice Conference, Portland, ME, USA, 31.08.2014-05.09.2014. Portland, ME, USA: Fish Vet Group, p. 54. http://sealice2014.businesscatalyst.com/assets/abstract-book-v6.2-final2.pdf

Article

Expressional regulation of key hepatic enzymes of intermediary metabolism in European seabass (Dicentrarchus labrax) during food deprivation and refeeding

Viegas I, Caballero-Solares A, Rito J, Giralt M, Pardal MA, Metón I, Jones JG & Baanante IV (2014) Expressional regulation of key hepatic enzymes of intermediary metabolism in European seabass (Dicentrarchus labrax) during food deprivation and refeeding. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 174, pp. 38-44. https://doi.org/10.1016/j.cbpa.2014.04.004

Article

Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina)

Schwartze VU, Winter S, Shelest E, Marcet-Houben M, Horn F, Wehner S, Linde J, Valiante V, Sammeth M, Riege K, Nowrousian M, Kaerger K, Jacobsen ID, Marz M & Brakhage AA (2014) Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina). PLoS Genetics, 10 (8), Art. No.: e1004496. https://doi.org/10.1371/journal.pgen.1004496

Article

miR-17 is involved in the regulation of LC-PUFA biosynthesis in vertebrates: Effects on liver expression of a fatty acyl desaturase in the marine teleost Siganus canaliculatus

Zhang Q, Xie D, Wang S, You C, Monroig O, Tocher DR & Li Y (2014) miR-17 is involved in the regulation of LC-PUFA biosynthesis in vertebrates: Effects on liver expression of a fatty acyl desaturase in the marine teleost Siganus canaliculatus. Biochimica et Biophysica Acta (BBA)- Molecular and Cell Biology of Lipids, 1841 (7), pp. 934-943. https://doi.org/10.1016/j.bbalip.2014.03.009

Article

Spectrophotometric determination of sperm concentration and short-term cold-storage of sperm in Atlantic croaker Micropogonias undulatus L. broodstock

Leclercq E, Antoni L, Bardon-Albaret A, Anderson CR, Somerset CR & Saillant EA (2014) Spectrophotometric determination of sperm concentration and short-term cold-storage of sperm in Atlantic croaker Micropogonias undulatus L. broodstock [Atlantic croaker milt management in hatchery]. Aquaculture Research, 45 (8), pp. 1283-1294. https://doi.org/10.1111/are.12073

Article

In vivo metabolism of unsaturated fatty acids in Octopus vulgaris hatchlings determined by incubation with 14C-labelled fatty acids added directly to seawater as protein complexes

Reis DB, Acosta NG, Almansa E, Navarro JC, Tocher DR, Monroig O, Andrade JP, Sykes AV & Rodriguez C (2014) In vivo metabolism of unsaturated fatty acids in Octopus vulgaris hatchlings determined by incubation with 14C-labelled fatty acids added directly to seawater as protein complexes. Aquaculture, 431, pp. 28-33. https://doi.org/10.1016/j.aquaculture.2014.05.016

Article

Effect of partial replacement of dietary fish meal and oil by pumpkin kernel cake and rapeseed oil on fatty acid composition and metabolism in Arctic charr (Salvelinus alpinus)

Murray DS, Hager H, Tocher DR & Kainz MJ (2014) Effect of partial replacement of dietary fish meal and oil by pumpkin kernel cake and rapeseed oil on fatty acid composition and metabolism in Arctic charr (Salvelinus alpinus). Aquaculture, 431, pp. 85-91. https://doi.org/10.1016/j.aquaculture.2014.03.039