Book Chapter

Homology Search for Small Structured Non-coding RNAs

Details

Citation

Marz M, Wehner S & Stadler PF (2014) Homology Search for Small Structured Non-coding RNAs. In: Hartmann R, Bindereif A, Schon A & Westhof E (eds.) Handbook of RNA Biochemistry. Weinheim: Wiley-VCH Verlag GmbH & Co. KGaA, pp. 619-632. http://dx.doi.org/10.1002/9783527647064.ch29; https://doi.org/10.1002/9783527647064.ch29

Keywords
homology search; NCBI; BLAST; FASTA; GenBank; nucleotide blast; ENSEMBL; structured non-coding RNAs (ncRNAs); secondary structure; Weblogo; locARNA; emacs; SARSE; gotohscan; fragrep; RNAfold; RNAalifold; RNAz; clustalw; rnabob; infernal; covariance model (CM); mascRNA; menRNA; MALAT-1 transcript; NEAT1 transcript; RNase P cleavage; cloverleaf structure

StatusPublished
Publication date31/12/2014
PublisherWiley-VCH Verlag GmbH & Co. KGaA
Publisher URLhttp://dx.doi.org/10.1002/9783527647064.ch29
Place of publicationWeinheim
ISBN9783527647064
eISBN9783527619504